HL_6ZQE_024

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6ZQE|1|D3|A|1001, 6ZQE|1|D3|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_024 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.165

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZQE|1|D3|G|997
6ZQE|1|D3|A|998
6ZQE|1|D3|U|999
6ZQE|1|D3|C|1000
6ZQE|1|D3|A|1001
6ZQE|1|D3|G|1002
6ZQE|1|D3|A|1003
6ZQE|1|D3|U|1004
6ZQE|1|D3|A|1005
6ZQE|1|D3|C|1006
6ZQE|1|D3|C|1007

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DO

40S ribosomal protein S14-A

Chain JJ

Pre-rRNA-processing protein PNO1

Chain UM

U3 small nucleolar RNA-associated protein 13