HL_6ZQE_025

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

6ZQE|1|D3|U|1057, 6ZQE|1|D3|U|1058, 6ZQE|1|D3|U|1059, 6ZQE|1|D3|U|1060, 6ZQE|1|D3|U|1063

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_025 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2577

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6ZQE|1|D3|U|1055
6ZQE|1|D3|U|1056
6ZQE|1|D3|U|1057
6ZQE|1|D3|U|1058
6ZQE|1|D3|U|1059
6ZQE|1|D3|U|1060
6ZQE|1|D3|A|1061
6ZQE|1|D3|A|1062
6ZQE|1|D3|U|1063
6ZQE|1|D3|G|1064

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CN

Ribosomal RNA-processing protein 7

Chain DA

40S ribosomal protein S1-A

Chain UV

U3 small nucleolar RNA-associated protein 22