HL_6ZQE_032

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_032 not in the Motif Atlas

Geometric match to HL_7RQB_063

Geometric discrepancy: 0.3068

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6ZQE|1|D3|G|1698
6ZQE|1|D3|G|1699
6ZQE|1|D3|C|1700
6ZQE|1|D3|A|1701
6ZQE|1|D3|A|1702
6ZQE|1|D3|C|1703

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UV

U3 small nucleolar RNA-associated protein 22