HL_6ZQF_004

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6ZQF|1|D3|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_004 not in the Motif Atlas

Homologous match to HL_4V88_189

Geometric discrepancy: 0.4126

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6ZQF|1|D3|C|190
6ZQF|1|D3|C|191
6ZQF|1|D3|U|192
6ZQF|1|D3|U|193
6ZQF|1|D3|U|194
6ZQF|1|D3|G|195

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DI

40S ribosomal protein S8-A