RNA 3D Hub //

6ZQF Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZQF_0031/D3/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6ZQF_0061/D3/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZQF_0101/D3/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6ZQF_0121/D3/450:456No text annotation
homologous
HL_4V88_197
NA

Problematic loops

#loop idProblemSequence
HL_6ZQF_001No text annotation
HL_6ZQF_002No text annotation
HL_6ZQF_004No text annotation
HL_6ZQF_031No text annotation
HL_6ZQF_005No text annotation
HL_6ZQF_032No text annotation
HL_6ZQF_007Mini UNCG
HL_6ZQF_008GNRA related
HL_6ZQF_009No text annotation
HL_6ZQF_034No text annotation
HL_6ZQF_011UNCG
HL_6ZQF_033No text annotation
HL_6ZQF_013No text annotation
HL_6ZQF_014No text annotation
HL_6ZQF_015No text annotation
HL_6ZQF_016No text annotation
HL_6ZQF_017No text annotation
HL_6ZQF_018No text annotation
HL_6ZQF_019Pseudoknot geometry
HL_6ZQF_020No text annotation
HL_6ZQF_021GNRA
HL_6ZQF_022No text annotation
HL_6ZQF_023No text annotation
HL_6ZQF_024GNRA
HL_6ZQF_025No text annotation
HL_6ZQF_026GNRA
HL_6ZQF_027No text annotation
HL_6ZQF_028No text annotation
HL_6ZQF_029Purine riboswitch
HL_6ZQF_030Mini UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZQF_0581/D3/35:41,
1/D3/466:473		No text annotation
IL_6ZQF_0021/D3/37:41,
1/D3/466:471		No text annotation
IL_6ZQF_0031/D3/50:52,
1/D3/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZQF_0051/D3/64:69,
1/D3/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6ZQF_0061/D3/109:112,
1/D3/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6ZQF_0071/D3/113:116,
1/D3/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZQF_0081/D3/117:122,
1/D3/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6ZQF_0141/D3/265:267,
1/D3/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6ZQF_0211/D3/411:413,
1/D3/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZQF_0221/D3/439:441,
1/D3/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_6ZQF_0651/D3/443:447,
1/D3/460:461		C-loop
homologous
IL_8P9A_397
IL_26900.1
IL_6ZQF_0661/D3/447:448,
1/D3/458:460		Single bulged G
homologous
IL_8P9A_398
IL_28408.2
IL_6ZQF_0251/D3/517:518,
1/D3/533:535		Minor groove platform
geometric
IL_4V88_388
NA
IL_6ZQF_0261/D3/518:520,
1/D3/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_6ZQF_0491/D3/1051:1053,
1/D3/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_6ZQF_0511/D3/1157:1160,
1/D3/1617:1621		C-loop
homologous
IL_4V88_443
NA

Problematic loops

#loop idProblemSequence
IL_6ZQF_001Isolated non-canonical cWW pair
IL_6ZQF_004No text annotation
IL_6ZQF_009tWH-tWH-tHW-tHW
IL_6ZQF_010Isolated cWH basepair
IL_6ZQF_011Double sheared
IL_6ZQF_012Major groove platform with extra cWW
IL_6ZQF_013Isolated non-canonical cWW pair
IL_6ZQF_015No text annotation
IL_6ZQF_016Single bulged U
IL_6ZQF_017Kink-turn with non-sequential stacking
IL_6ZQF_018No text annotation
IL_6ZQF_019No text annotation
IL_6ZQF_020Isolated cWH basepair
IL_6ZQF_023C-loop with extra cWW pair
IL_6ZQF_024No text annotation
IL_6ZQF_027Multiple bulged bases
IL_6ZQF_059No text annotation
IL_6ZQF_028No text annotation
IL_6ZQF_029No text annotation
IL_6ZQF_030Isolated non-canonical cWW pair
IL_6ZQF_031tSH-tHW-tHS
IL_6ZQF_032Isolated non-canonical cWW pair
IL_6ZQF_033No text annotation
IL_6ZQF_034Major groove minor groove platform with extra cWW
IL_6ZQF_067No text annotation
IL_6ZQF_035Isolated non-canonical cWW pair
IL_6ZQF_036No text annotation
IL_6ZQF_037No text annotation
IL_6ZQF_038Major groove platform; stack outside cWW
IL_6ZQF_039Tandem non-canonical cWW pairs
IL_6ZQF_060Isolated non-canonical cWW pair
IL_6ZQF_040Tandem non-canonical cWW pairs
IL_6ZQF_041Tandem non-canonical cWW pairs
IL_6ZQF_042Tandem non-canonical cWW pairs
IL_6ZQF_043Isolated non-canonical cWW pair
IL_6ZQF_061No text annotation
IL_6ZQF_044Kink-turn
IL_6ZQF_045Other IL
IL_6ZQF_046tSH-tHW-tHS
IL_6ZQF_047No text annotation
IL_6ZQF_048Tandem non-canonical cWW pairs
IL_6ZQF_062Isolated tHS basepair with bulges
IL_6ZQF_050No text annotation
IL_6ZQF_063No text annotation
IL_6ZQF_064No text annotation
IL_6ZQF_052Isolated non-canonical cWW pair
IL_6ZQF_053No text annotation
IL_6ZQF_054180 degree turn
IL_6ZQF_055Tandem non-canonical cWW pairs
IL_6ZQF_056No text annotation
IL_6ZQF_057Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZQF_0011/D3/41:48,
1/D3/431:439,
1/D3/464:466		No text annotation
J3_6ZQF_0021/D3/633:635,
1/D3/861:865,
1/D3/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6ZQF_0101/D3/633:635,
1/D3/861:866,
1/D3/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J4_6ZQF_0011/D3/99:107,
1/D3/307:309,
1/D3/357:361,
1/D3/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J5_6ZQF_0011/D3/31:35,
1/D3/473:479,
1/D3/509:516,
1/D3/536:546,
1/D3/592:595		No text annotation
J5_6ZQF_0021/D3/31:41,
1/D3/466:479,
1/D3/509:516,
1/D3/536:546,
1/D3/592:595		No text annotation
J5_6ZQF_0031/D3/54:57,
1/D3/90:97,
1/D3/386:388,
1/D3/409:411,
1/D3/422:426		No text annotation
homologous
J5_8P9A_017
J5_58574.1
J5_6ZQF_0041/D3/124:143,
1/D3/172:182,
1/D3/203:204,
1/D3/263:265,
1/D3/289:293		No text annotation
J5_6ZQF_0051/D3/124:143,
1/D3/172:182,
1/D3/203:204,
1/D3/263:267,
1/D3/288:293		No text annotation

Problematic loops

#loop idProblemSequence
J3_6ZQF_009No text annotation
J3_6ZQF_003No text annotation
J3_6ZQF_004No text annotation
J3_6ZQF_005No text annotation
J3_6ZQF_006No text annotation
J3_6ZQF_011No text annotation
J3_6ZQF_007No text annotation
J3_6ZQF_008No text annotation
J4_6ZQF_002No text annotation
J5_6ZQF_006No text annotation

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