RNA 3D Hub //

6ZQF Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZQF_0011/D3/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6ZQF_0021/D3/70:81No text annotation
homologous
HL_4V88_187
NA
HL_6ZQF_0031/D3/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6ZQF_0041/D3/190:195No text annotation
homologous
HL_4V88_189
NA
HL_6ZQF_0051/D3/230:235No text annotation
geometric
HL_6CZR_082
NA
HL_6ZQF_0061/D3/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZQF_0321/D3/275:281No text annotation
HL_6ZQF_0071/D3/276:279Mini UNCG
geometric
HL_4WF9_037
HL_48778.2
HL_6ZQF_0081/D3/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6ZQF_0341/D3/368:373No text annotation
homologous
HL_8P9A_198
HL_93535.1
HL_6ZQF_0101/D3/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6ZQF_0111/D3/414:419UNCG
homologous
HL_4V88_196
NA
HL_6ZQF_0121/D3/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6ZQF_0331/D3/480:508No text annotation
HL_6ZQF_0131/D3/491:496No text annotation
homologous
HL_4V88_198
NA
HL_6ZQF_0141/D3/520:532No text annotation
geometric
HL_4V88_199
NA
HL_6ZQF_0151/D3/561:566No text annotation
geometric
HL_4V9F_011
HL_75660.5
HL_6ZQF_0161/D3/703:735No text annotation
HL_6ZQF_0171/D3/764:772No text annotation
homologous
HL_4V88_203
NA
HL_6ZQF_0181/D3/777:783No text annotation
homologous
HL_4V88_204
NA
HL_6ZQF_0191/D3/829:843Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_6ZQF_0201/D3/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6ZQF_0211/D3/937:942GNRA
homologous
HL_4V88_207
NA
HL_6ZQF_0221/D3/997:1007No text annotation
HL_6ZQF_0231/D3/1055:1064No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_6ZQF_0241/D3/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_6ZQF_0261/D3/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_6ZQF_0271/D3/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_6ZQF_0281/D3/1594:1602No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6ZQF_0291/D3/1629:1636Purine riboswitch
geometric
HL_4LX6_002
HL_31585.4
HL_6ZQF_0301/D3/1778:1783Mini UNCG
geometric
HL_6AAX_001
HL_56334.1

Problematic loops

#loop idProblemSequence
HL_6ZQF_031No text annotation
HL_6ZQF_009No text annotation
HL_6ZQF_025No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZQF_0011/D3/35:37,
1/D3/471:473		Isolated non-canonical cWW pair
geometric
IL_1ZZ5_004
NA
IL_6ZQF_0581/D3/35:41,
1/D3/466:473		No text annotation
IL_6ZQF_0021/D3/37:41,
1/D3/466:471		No text annotation
IL_6ZQF_0031/D3/50:52,
1/D3/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZQF_0041/D3/58:63,
1/D3/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6ZQF_0051/D3/64:69,
1/D3/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6ZQF_0061/D3/109:112,
1/D3/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6ZQF_0071/D3/113:116,
1/D3/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZQF_0081/D3/117:122,
1/D3/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6ZQF_0091/D3/143:149,
1/D3/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6ZQF_0101/D3/150:152,
1/D3/162:164		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.6
IL_6ZQF_0111/D3/186:189,
1/D3/196:199		Double sheared
homologous
IL_4V88_396
NA
IL_6ZQF_0121/D3/204:206,
1/D3/259:263		Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_6ZQF_0131/D3/206:208,
1/D3/257:259		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_6ZQF_0141/D3/265:267,
1/D3/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6ZQF_0151/D3/270:273,
1/D3/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6ZQF_0161/D3/275:276,
1/D3/279:281		Single bulged U
homologous
IL_4V88_401
NA
IL_6ZQF_0171/D3/311:316,
1/D3/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6ZQF_0181/D3/318:323,
1/D3/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6ZQF_0191/D3/363:365,
1/D3/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_6ZQF_0201/D3/389:391,
1/D3/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6ZQF_0211/D3/411:413,
1/D3/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZQF_0221/D3/439:441,
1/D3/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_6ZQF_0651/D3/443:447,
1/D3/460:461		C-loop
homologous
IL_8P9A_397
IL_03109.3
IL_6ZQF_0661/D3/447:448,
1/D3/458:460		Single bulged G
homologous
IL_8P9A_398
IL_00225.14
IL_6ZQF_0241/D3/480:485,
1/D3/502:508		No text annotation
IL_6ZQF_0251/D3/517:518,
1/D3/533:535		Minor groove platform
geometric
IL_4V88_388
NA
IL_6ZQF_0261/D3/518:520,
1/D3/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_6ZQF_0271/D3/551:552,
1/D3/584:587		Multiple bulged bases
geometric
IL_7A0S_090
IL_42626.2
IL_6ZQF_0591/D3/551:559,
1/D3/568:587		No text annotation
IL_6ZQF_0281/D3/552:559,
1/D3/568:584		No text annotation
IL_6ZQF_0291/D3/616:622,
1/D3/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_6ZQF_0301/D3/624:626,
1/D3/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6ZQF_0311/D3/627:631,
1/D3/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6ZQF_0321/D3/646:648,
1/D3/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_6ZQF_0331/D3/652:658,
1/D3/676:682		No text annotation
IL_6ZQF_0671/D3/746:747,
1/D3/802:805		No text annotation
homologous
IL_8CRE_428
IL_68140.4
IL_6ZQF_0351/D3/748:750,
1/D3/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6ZQF_0361/D3/751:759,
1/D3/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_6ZQF_0371/D3/817:824,
1/D3/848:854		No text annotation
IL_6ZQF_0381/D3/865:866,
1/D3/962:965		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6ZQF_0601/D3/868:870,
1/D3/957:960		Isolated non-canonical cWW pair
homologous
IL_8P9A_418
IL_57744.1
IL_6ZQF_0401/D3/871:874,
1/D3/953:956		Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_6ZQF_0411/D3/874:878,
1/D3/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6ZQF_0421/D3/885:888,
1/D3/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6ZQF_0431/D3/893:895,
1/D3/917:919		Isolated non-canonical cWW pair
homologous
IL_4V88_433
NA
IL_6ZQF_0611/D3/893:899,
1/D3/910:919		No text annotation
homologous
IL_8P9A_422
IL_57741.1
IL_6ZQF_0441/D3/895:899,
1/D3/910:917		Kink-turn
geometric
IL_4V88_434
NA
IL_6ZQF_0451/D3/985:990,
1/D3/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_6ZQF_0461/D3/990:994,
1/D3/1010:1014		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6ZQF_0471/D3/1034:1036,
1/D3/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_6ZQF_0481/D3/1041:1044,
1/D3/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6ZQF_0491/D3/1051:1053,
1/D3/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_6ZQF_0621/D3/1116:1119,
1/D4/6:8		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_6ZQF_0631/D3/1150:1151,
1/D3/1627:1640		No text annotation
IL_6ZQF_0511/D3/1157:1160,
1/D3/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6ZQF_0521/D3/1173:1175,
1/D3/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6ZQF_0531/D3/1480:1487,
1/D3/1519:1527		No text annotation
homologous
IL_4V88_459
NA
IL_6ZQF_0541/D3/1488:1494,
1/D3/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_6ZQF_0551/D3/1495:1498,
1/D3/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_6ZQF_0561/D3/1540:1545,
1/D3/1566:1571		No text annotation
geometric
IL_4V88_462
NA
IL_6ZQF_0571/D3/1650:1652,
1/D3/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA

Problematic loops

#loop idProblemSequence
IL_6ZQF_023C-loop with extra cWW pair
IL_6ZQF_034Major groove minor groove platform with extra cWW
IL_6ZQF_039Tandem non-canonical cWW pairs
IL_6ZQF_050No text annotation
IL_6ZQF_064No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZQF_0011/D3/41:48,
1/D3/431:439,
1/D3/464:466		No text annotation
J3_6ZQF_0091/D3/213:228,
1/D3/237:243,
1/D3/250:252		No text annotation
J3_6ZQF_0021/D3/633:635,
1/D3/861:865,
1/D3/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6ZQF_0101/D3/633:635,
1/D3/861:866,
1/D3/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_6ZQF_0031/D3/760:763,
1/D3/773:775,
1/D3/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_6ZQF_0041/D3/881:884,
1/D3/928:936,
1/D3/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6ZQF_0051/D3/1037:1039,
1/D3/1079:1083,
1/D3/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_6ZQF_0061/D3/1150:1151,
1/D3/1627:1629,
1/D3/1636:1640		No text annotation
J3_6ZQF_0111/D3/1161:1164,
1/D3/1581:1587,
1/D3/1609:1616		No text annotation
homologous
J3_8P9A_076
J3_25303.4
J3_6ZQF_0071/D3/1168:1171,
1/D3/1468:1470,
1/D3/1574:1577		No text annotation
homologous
J3_4V88_036
NA
J3_6ZQF_0081/D3/1470:1474,
1/D3/1533:1540,
1/D3/1571:1574		No text annotation
homologous
J3_4V88_041
NA
J4_6ZQF_0011/D3/99:107,
1/D3/307:309,
1/D3/357:361,
1/D3/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_6ZQF_0021/D3/622:624,
1/D3/975:980,
1/D3/1021:1032,
1/D3/1103:1104		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_6ZQF_0011/D3/31:35,
1/D3/473:479,
1/D3/509:516,
1/D3/536:546,
1/D3/592:595		No text annotation
J5_6ZQF_0021/D3/31:41,
1/D3/466:479,
1/D3/509:516,
1/D3/536:546,
1/D3/592:595		No text annotation
J5_6ZQF_0031/D3/54:57,
1/D3/90:97,
1/D3/386:388,
1/D3/409:411,
1/D3/422:426		No text annotation
homologous
J5_8P9A_017
J5_59910.6
J5_6ZQF_0041/D3/124:143,
1/D3/172:182,
1/D3/203:204,
1/D3/263:265,
1/D3/289:293		No text annotation
J5_6ZQF_0051/D3/124:143,
1/D3/172:182,
1/D3/203:204,
1/D3/263:267,
1/D3/288:293		No text annotation
J5_6ZQF_0061/D3/636:641,
1/D3/693:698,
1/D3/740:744,
1/D3/807:817,
1/D3/854:860		No text annotation

Problematic loops

No problematic loops


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