HL_6ZQF_016

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

6ZQF|1|D3|U|719, 6ZQF|1|D3|U|721, 6ZQF|1|D3|U|728

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|G|703
6ZQF|1|D3|C|704
6ZQF|1|D3|U|705
6ZQF|1|D3|A|706
6ZQF|1|D3|A|707
6ZQF|1|D3|C|708
6ZQF|1|D3|C|709
6ZQF|1|D3|U|710
6ZQF|1|D3|U|711
6ZQF|1|D3|G|712
6ZQF|1|D3|A|713
6ZQF|1|D3|G|714
6ZQF|1|D3|U|715
6ZQF|1|D3|C|716
6ZQF|1|D3|C|717
6ZQF|1|D3|U|718
6ZQF|1|D3|U|719
6ZQF|1|D3|G|720
6ZQF|1|D3|U|721
6ZQF|1|D3|G|722
6ZQF|1|D3|G|723
6ZQF|1|D3|C|724
6ZQF|1|D3|U|725
6ZQF|1|D3|C|726
6ZQF|1|D3|U|727
6ZQF|1|D3|U|728
6ZQF|1|D3|G|729
6ZQF|1|D3|G|730
6ZQF|1|D3|C|731
6ZQF|1|D3|G|732
6ZQF|1|D3|A|733
6ZQF|1|D3|A|734
6ZQF|1|D3|C|735

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A