HL_6ZQF_029
3D structure
- PDB id
- 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GUACACAC
- Length
- 8 nucleotides
- Bulged bases
- 6ZQF|1|D3|C|1632
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZQF_029 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3154
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6ZQF|1|D3|G|1629
6ZQF|1|D3|U|1630
6ZQF|1|D3|A|1631
6ZQF|1|D3|C|1632
6ZQF|1|D3|A|1633
6ZQF|1|D3|C|1634
6ZQF|1|D3|A|1635
6ZQF|1|D3|C|1636
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain UA
- Periodic tryptophan protein 2
- Chain UL
- U3 small nucleolar RNA-associated protein 12
- Chain UM
- U3 small nucleolar RNA-associated protein 13
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