HL_6ZQF_031

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UCUUCGGA

Length

8 nucleotides

Bulged bases

6ZQF|1|D3|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_031 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3283

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZQF|1|D3|U|229
6ZQF|1|D3|C|230
6ZQF|1|D3|U|231
6ZQF|1|D3|U|232
6ZQF|1|D3|C|233
6ZQF|1|D3|G|234
6ZQF|1|D3|G|235
6ZQF|1|D3|A|236

Current chains

Chain D3

18S rRNA

Nearby chains