HL_6ZQG_025

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUAC

Length

6 nucleotides

Bulged bases

6ZQG|1|D3|A|1183

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_025 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2941

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZQG|1|D3|G|1179
6ZQG|1|D3|C|1180
6ZQG|1|D3|U|1181
6ZQG|1|D3|U|1182
6ZQG|1|D3|A|1183
6ZQG|1|D3|C|1459

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain UB

Nucleolar complex protein 14