HL_6ZQG_027

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

6ZQG|1|D3|U|1558, 6ZQG|1|D3|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQG_027 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.4163

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZQG|1|D3|A|1550
6ZQG|1|D3|U|1551
6ZQG|1|D3|U|1552
6ZQG|1|D3|G|1553
6ZQG|1|D3|U|1554
6ZQG|1|D3|A|1555
6ZQG|1|D3|A|1556
6ZQG|1|D3|U|1557
6ZQG|1|D3|U|1558
6ZQG|1|D3|A|1559
6ZQG|1|D3|U|1560
6ZQG|1|D3|U|1561

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain UB

Nucleolar complex protein 14