HL_6ZSB_041

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6ZSB|1|XA|A|2500, 6ZSB|1|XA|C|2501, 6ZSB|1|XA|C|2502, 6ZSB|1|XA|A|2506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSB_041 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1474

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZSB|1|XA|U|2497
6ZSB|1|XA|U|2498
6ZSB|1|XA|U|2499
6ZSB|1|XA|A|2500
6ZSB|1|XA|C|2501
6ZSB|1|XA|C|2502
6ZSB|1|XA|A|2503
6ZSB|1|XA|A|2504
6ZSB|1|XA|A|2505
6ZSB|1|XA|A|2506
6ZSB|1|XA|A|2507

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain XD

39S ribosomal protein L2, mitochondrial

Chain XT

39S ribosomal protein L22, mitochondrial