HL_6ZSC_053

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

6ZSC|1|XA|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSC_053 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1868

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6ZSC|1|XA|U|3015
6ZSC|1|XA|G|3016
6ZSC|1|XA|C|3017
6ZSC|1|XA|A|3018
6ZSC|1|XA|G|3019
6ZSC|1|XA|C|3020
6ZSC|1|XA|C|3021
6ZSC|1|XA|G|3022

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial