HL_6ZSD_045

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

6ZSD|1|XA|U|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSD_045 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2039

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZSD|1|XA|C|2612
6ZSD|1|XA|U|2613
6ZSD|1|XA|U|2614
6ZSD|1|XA|A|2615
6ZSD|1|XA|A|2616
6ZSD|1|XA|A|2617
6ZSD|1|XA|U|2618
6ZSD|1|XA|A|2619
6ZSD|1|XA|G|2620

Current chains

Chain XA

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XL

39S ribosomal protein L14, mitochondrial