HL_6ZSE_041

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6ZSE|1|XA|A|2500, 6ZSE|1|XA|C|2501, 6ZSE|1|XA|C|2502, 6ZSE|1|XA|A|2506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSE_041 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1707

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6ZSE|1|XA|U|2497
6ZSE|1|XA|U|2498
6ZSE|1|XA|U|2499
6ZSE|1|XA|A|2500
6ZSE|1|XA|C|2501
6ZSE|1|XA|C|2502
6ZSE|1|XA|A|2503
6ZSE|1|XA|A|2504
6ZSE|1|XA|A|2505
6ZSE|1|XA|A|2506
6ZSE|1|XA|A|2507

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain XD

39S ribosomal protein L2, mitochondrial

Chain XT

39S ribosomal protein L22, mitochondrial