HL_6ZSE_060

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UUAAACAAA

Length

9 nucleotides

Bulged bases

6ZSE|1|XB|U|1614, 6ZSE|1|XB|C|1619

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZSE_060 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.3494

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6ZSE|1|XB|U|1613
6ZSE|1|XB|U|1614
6ZSE|1|XB|A|1615
6ZSE|1|XB|A|1616
6ZSE|1|XB|A|1618
6ZSE|1|XB|C|1619
6ZSE|1|XB|A|1620
6ZSE|1|XB|A|1621
6ZSE|1|XB|A|1622

Current chains

Chain XB

mt-tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain XP

Mitochondrial ribosomal protein L18, isoform CRA_b