HL_6ZTJ_030

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6ZTJ|1|AA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_030 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1035

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZTJ|1|AA|G|1356
6ZTJ|1|AA|A|1357
6ZTJ|1|AA|U|1358
6ZTJ|1|AA|C|1359
6ZTJ|1|AA|A|1360
6ZTJ|1|AA|G|1361
6ZTJ|1|AA|A|1362
6ZTJ|1|AA|A|1363
6ZTJ|1|AA|U|1364
6ZTJ|1|AA|G|1365
6ZTJ|1|AA|C|1366

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14