HL_6ZTJ_093

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_093 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1136

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZTJ|1|BA|G|2303
6ZTJ|1|BA|G|2304
6ZTJ|1|BA|U|2305
6ZTJ|1|BA|C|2306
6ZTJ|1|BA|G|2307
6ZTJ|1|BA|G|2308
6ZTJ|1|BA|A|2309
6ZTJ|1|BA|C|2310
6ZTJ|1|BA|A|2311
6ZTJ|1|BA|U|2312
6ZTJ|1|BA|C|2313

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5