HL_6ZTJ_099

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6ZTJ|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_099 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0667

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6ZTJ|1|BA|U|2528
6ZTJ|1|BA|G|2529
6ZTJ|1|BA|A|2530
6ZTJ|1|BA|A|2531
6ZTJ|1|BA|G|2532
6ZTJ|1|BA|U|2533
6ZTJ|1|BA|A|2534
6ZTJ|1|BA|G|2535

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6