3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6ZTJ|1|BA|G|2751, 6ZTJ|1|BA|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZTJ_104 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0798
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6ZTJ|1|BA|C|2745
6ZTJ|1|BA|U|2746
6ZTJ|1|BA|G|2747
6ZTJ|1|BA|A|2748
6ZTJ|1|BA|A|2749
6ZTJ|1|BA|A|2750
6ZTJ|1|BA|G|2751
6ZTJ|1|BA|C|2752
6ZTJ|1|BA|A|2753
6ZTJ|1|BA|U|2754
6ZTJ|1|BA|C|2755
6ZTJ|1|BA|U|2756
6ZTJ|1|BA|A|2757
6ZTJ|1|BA|A|2758
6ZTJ|1|BA|G|2759

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B6
50S ribosomal protein L36
Chain BG
50S ribosomal protein L6
Chain BK
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2516 s