HL_6ZTJ_104

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6ZTJ|1|BA|G|2751, 6ZTJ|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_104 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0798

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6ZTJ|1|BA|C|2745
6ZTJ|1|BA|U|2746
6ZTJ|1|BA|G|2747
6ZTJ|1|BA|A|2748
6ZTJ|1|BA|A|2749
6ZTJ|1|BA|A|2750
6ZTJ|1|BA|G|2751
6ZTJ|1|BA|C|2752
6ZTJ|1|BA|A|2753
6ZTJ|1|BA|U|2754
6ZTJ|1|BA|C|2755
6ZTJ|1|BA|U|2756
6ZTJ|1|BA|A|2757
6ZTJ|1|BA|A|2758
6ZTJ|1|BA|G|2759

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L13