HL_6ZTJ_112

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6ZTJ|1|BA|U|958, 6ZTJ|1|BA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTJ_112 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1802

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6ZTJ|1|BA|PSU|955
6ZTJ|1|BA|G|956
6ZTJ|1|BA|C|957
6ZTJ|1|BA|U|958
6ZTJ|1|BA|A|959
6ZTJ|1|BA|A|960
6ZTJ|1|BA|C|961
6ZTJ|1|BA|G|962

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BN

50S ribosomal protein L16