HL_6ZTM_073

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6ZTM|1|BA|A|1453, 6ZTM|1|BA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTM_073 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1056

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ZTM|1|BA|C|1451
6ZTM|1|BA|G|1452
6ZTM|1|BA|A|1453
6ZTM|1|BA|C|1454
6ZTM|1|BA|G|1455
6ZTM|1|BA|G|1456
6ZTM|1|BA|U|1457
6ZTM|1|BA|U|1458
6ZTM|1|BA|G|1459

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L17