3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
6ZTM|1|BA|A|1913, 6ZTM|1|BA|C|1914, 6ZTM|1|BA|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZTM_085 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.1079
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

6ZTM|1|BA|G|1910
6ZTM|1|BA|PSU|1911
6ZTM|1|BA|A|1912
6ZTM|1|BA|A|1913
6ZTM|1|BA|C|1914
6ZTM|1|BA|3TD|1915
6ZTM|1|BA|A|1916
6ZTM|1|BA|PSU|1917
6ZTM|1|BA|A|1918
6ZTM|1|BA|A|1919
6ZTM|1|BA|C|1920

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AV
mRNA
Chain AW
Transfer RNA; tRNA
Chain AX
Transfer RNA; tRNA

Coloring options:


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