3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGCAAUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZTM_093 not in the Motif Atlas
Homologous match to HL_5J7L_189
Geometric discrepancy: 0.0922
The information below is about HL_5J7L_189
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
24

Unit IDs

6ZTM|1|BA|U|2324
6ZTM|1|BA|G|2325
6ZTM|1|BA|C|2326
6ZTM|1|BA|A|2327
6ZTM|1|BA|A|2328
6ZTM|1|BA|U|2329
6ZTM|1|BA|G|2330
6ZTM|1|BA|G|2331

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AW
Transfer RNA; tRNA
Chain BF
50S ribosomal protein L5
Chain BN
50S ribosomal protein L16
Chain BX
50S ribosomal protein L27

Coloring options:


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