HL_6ZTN_115

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6ZTN|1|BA|U|958, 6ZTN|1|BA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTN_115 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.2476

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6ZTN|1|BA|PSU|955
6ZTN|1|BA|G|956
6ZTN|1|BA|C|957
6ZTN|1|BA|U|958
6ZTN|1|BA|A|959
6ZTN|1|BA|A|960
6ZTN|1|BA|C|961
6ZTN|1|BA|G|962

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BN

50S ribosomal protein L16