HL_6ZTO_094

3D structure

PDB id

6ZTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZTO_094 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0844

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6ZTO|1|BA|U|2324
6ZTO|1|BA|G|2325
6ZTO|1|BA|C|2326
6ZTO|1|BA|A|2327
6ZTO|1|BA|A|2328
6ZTO|1|BA|U|2329
6ZTO|1|BA|G|2330
6ZTO|1|BA|G|2331

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B3

50S ribosomal protein L33

Chain BF

50S ribosomal protein L5

Chain BN

50S ribosomal protein L16

Chain BX

50S ribosomal protein L27