HL_6ZU1_036

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

6ZU1|1|AX|C|17, 6ZU1|1|AX|G|18, 6ZU1|1|AX|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU1_036 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.1655

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6ZU1|1|AX|C|13
6ZU1|1|AX|A|14
6ZU1|1|AX|G|15
6ZU1|1|AX|H2U|16
6ZU1|1|AX|C|17
6ZU1|1|AX|G|18
6ZU1|1|AX|G|19
6ZU1|1|AX|H2U|20
6ZU1|1|AX|A|21
6ZU1|1|AX|G|22

Current chains

Chain AX

Phe-NH-tRNA(Phe) A-site

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA