HL_6ZU5_030

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGCGAGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_030 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1729

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6ZU5|1|L50|G|1168
6ZU5|1|L50|C|1169
6ZU5|1|L50|G|1170
6ZU5|1|L50|C|1171
6ZU5|1|L50|G|1172
6ZU5|1|L50|A|1173
6ZU5|1|L50|G|1174
6ZU5|1|L50|C|1175
6ZU5|1|L50|C|1176

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LDD

eL31

Chain LP0

uL22

Chain LR0

eL19