HL_6ZU5_031

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCGCUC

Length

7 nucleotides

Bulged bases

6ZU5|1|L50|C|1209, 6ZU5|1|L50|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_031 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2922

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZU5|1|L50|G|1208
6ZU5|1|L50|C|1209
6ZU5|1|L50|C|1210
6ZU5|1|L50|G|1211
6ZU5|1|L50|C|1212
6ZU5|1|L50|U|1213
6ZU5|1|L50|C|1214

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LP0

uL22

Chain LR0

eL19