HL_6ZU5_035

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCCUCCUC

Length

9 nucleotides

Bulged bases

6ZU5|1|L50|U|1350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_035 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.5485

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZU5|1|L50|G|1343
6ZU5|1|L50|C|1344
6ZU5|1|L50|C|1345
6ZU5|1|L50|C|1346
6ZU5|1|L50|U|1347
6ZU5|1|L50|C|1348
6ZU5|1|L50|C|1349
6ZU5|1|L50|U|1350
6ZU5|1|L50|C|1351

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LR0

eL19

Chain LU0

eL22