HL_6ZU5_054

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_054 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0854

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6ZU5|1|L50|C|2090
6ZU5|1|L50|A|2091
6ZU5|1|L50|C|2092
6ZU5|1|L50|A|2093
6ZU5|1|L50|A|2094
6ZU5|1|L50|G|2095
6ZU5|1|L50|G|2096
6ZU5|1|L50|G|2097

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LI0

uL16

Chain LOO

eL42

Chain LT0

eL21