HL_6ZU5_057

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCACGCCGC

Length

9 nucleotides

Bulged bases

6ZU5|1|L50|C|2168, 6ZU5|1|L50|G|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_057 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.3024

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZU5|1|L50|G|2167
6ZU5|1|L50|C|2168
6ZU5|1|L50|A|2169
6ZU5|1|L50|C|2170
6ZU5|1|L50|G|2171
6ZU5|1|L50|C|2172
6ZU5|1|L50|C|2173
6ZU5|1|L50|G|2174
6ZU5|1|L50|C|2175

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LAA

uL15

Chain LII

eL36

Chain LOO

eL42

Chain LQ0

eL18