HL_6ZU9_001

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CAG(H2U)GGAAG

Length

9 nucleotides

Bulged bases

6ZU9|1|1|G|18, 6ZU9|1|1|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU9_001 not in the Motif Atlas

Homologous match to HL_5UD5_001

Geometric discrepancy: 0.3086

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6ZU9|1|1|C|13
6ZU9|1|1|A|14
6ZU9|1|1|G|15
6ZU9|1|1|H2U|16
6ZU9|1|1|G|18
6ZU9|1|1|G|19
6ZU9|1|1|A|20
6ZU9|1|1|A|21
6ZU9|1|1|G|22

Current chains

Chain 1

tRNA

Nearby chains

Chain m

Eukaryotic translation initiation factor 5