RNA 3D Hub //

6ZU9 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_6ZU9_001tRNA D-loop
HL_6ZU9_002tRNA anticodon loop
HL_6ZU9_003No text annotation
HL_6ZU9_004No text annotation
HL_6ZU9_005No text annotation
HL_6ZU9_006GNRA related
HL_6ZU9_007No text annotation
HL_6ZU9_008No text annotation
HL_6ZU9_009T-loop with 1 bulged base
HL_6ZU9_010Mini UNCG
HL_6ZU9_011GNRA related
HL_6ZU9_012GNRA
HL_6ZU9_013No text annotation
HL_6ZU9_014UNCG
HL_6ZU9_015No text annotation
HL_6ZU9_016Externally structured
HL_6ZU9_017No text annotation
HL_6ZU9_018GNRA variation
HL_6ZU9_019No text annotation
HL_6ZU9_020No text annotation
HL_6ZU9_021No text annotation
HL_6ZU9_022No text annotation
HL_6ZU9_023No text annotation
HL_6ZU9_041Pseudoknot geometry
HL_6ZU9_024No text annotation
HL_6ZU9_025GNRA
HL_6ZU9_026No text annotation
HL_6ZU9_027No text annotation
HL_6ZU9_028GNRA
HL_6ZU9_029GNRA
HL_6ZU9_030No text annotation
HL_6ZU9_031Anticodon loop related
HL_6ZU9_032GNRA
HL_6ZU9_033No text annotation
HL_6ZU9_034No text annotation
HL_6ZU9_035GNRA
HL_6ZU9_036GNRA
HL_6ZU9_037No text annotation
HL_6ZU9_038No text annotation
HL_6ZU9_039No text annotation
HL_6ZU9_040GNRA variation

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
IL_6ZU9_001Single bulged C
IL_6ZU9_002Isolated non-canonical cWW pair
IL_6ZU9_003Triple sheared related
IL_6ZU9_004No text annotation
IL_6ZU9_005Minor groove platform
IL_6ZU9_006No text annotation
IL_6ZU9_007No text annotation
IL_6ZU9_008Tandem non-canonical cWW pairs
IL_6ZU9_009Multiple bulged bases
IL_6ZU9_010No text annotation
IL_6ZU9_011tWH-tWH-tHW-tHW
IL_6ZU9_012Isolated non-canonical cWW pair
IL_6ZU9_013Double sheared
IL_6ZU9_014Major groove platform with extra cWW
IL_6ZU9_015Isolated non-canonical cWW pair
IL_6ZU9_016Single bulged A
IL_6ZU9_017No text annotation
IL_6ZU9_018Single bulged U
IL_6ZU9_019Kink-turn with non-sequential stacking
IL_6ZU9_020No text annotation
IL_6ZU9_021No text annotation
IL_6ZU9_022Isolated cWH basepair
IL_6ZU9_023Isolated near basepair
IL_6ZU9_024Single bulged U
IL_6ZU9_025C-loop
IL_6ZU9_026Single bulged G
IL_6ZU9_027Single bulged A
IL_6ZU9_028No text annotation
IL_6ZU9_029Minor groove platform
IL_6ZU9_030Minor groove platform
IL_6ZU9_031SSU/LSU pseudoknot
IL_6ZU9_032Single bulged U
IL_6ZU9_033Kink-turn related
IL_6ZU9_034No text annotation
IL_6ZU9_035Isolated non-canonical cWW pair
IL_6ZU9_036tSH-tHW-tHS
IL_6ZU9_037Isolated non-canonical cWW pair
IL_6ZU9_038Major groove minor groove platform; mini C-loop
IL_6ZU9_039Isolated non-canonical cWW pair
IL_6ZU9_040No text annotation
IL_6ZU9_041No text annotation
IL_6ZU9_042Isolated non-canonical cWW pair
IL_6ZU9_043Major groove platform; stack outside cWW
IL_6ZU9_093Isolated non-canonical cWW pair
IL_6ZU9_044Tandem non-canonical cWW pairs
IL_6ZU9_100Single bulged U
IL_6ZU9_094Isolated non-canonical cWW pair
IL_6ZU9_045Tandem non-canonical cWW pairs
IL_6ZU9_046Tandem non-canonical cWW pairs
IL_6ZU9_047Tandem non-canonical cWW pairs
IL_6ZU9_048Isolated non-canonical cWW pair
IL_6ZU9_095No text annotation
IL_6ZU9_049Kink-turn
IL_6ZU9_050Other IL
IL_6ZU9_051tSH-tHW-tHS
IL_6ZU9_052No text annotation
IL_6ZU9_053Tandem non-canonical cWW pairs
IL_6ZU9_054Single bulged U
IL_6ZU9_0558x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6ZU9_056Single bulged A
IL_6ZU9_057Single bulged G
IL_6ZU9_058C-loop
IL_6ZU9_059Isolated non-canonical cWW pair
IL_6ZU9_060Minor groove platform
IL_6ZU9_061Isolated non-canonical cWW pair
IL_6ZU9_062No text annotation
IL_6ZU9_096No text annotation
IL_6ZU9_063No text annotation
IL_6ZU9_064No text annotation
IL_6ZU9_065Single bulged U
IL_6ZU9_066Tandem non-canonical cWW pairs
IL_6ZU9_097No text annotation
IL_6ZU9_098No text annotation
IL_6ZU9_067Minor groove platform with extra cWW
IL_6ZU9_068Single bulged A
IL_6ZU9_069Isolated cWH basepair
IL_6ZU9_070Minor groove platform
IL_6ZU9_071Isolated non-canonical cWW pair
IL_6ZU9_072Minor groove platform
IL_6ZU9_073Isolated non-canonical cWW pair
IL_6ZU9_074Major groove platform; stack outside cWW
IL_6ZU9_075No text annotation
IL_6ZU9_076180 degree turn
IL_6ZU9_077Tandem non-canonical cWW pairs
IL_6ZU9_078No text annotation
IL_6ZU9_079No text annotation
IL_6ZU9_080No text annotation
IL_6ZU9_081Isolated non-canonical cWW pair
IL_6ZU9_082Tandem non-canonical cWW pairs
IL_6ZU9_083Isolated non-canonical cWW pair
IL_6ZU9_084Double sheared
IL_6ZU9_099Single bulged U
IL_6ZU9_085Isolated cWS basepair
IL_6ZU9_086Isolated non-canonical cWW pair
IL_6ZU9_087Double sheared
IL_6ZU9_088Isolated non-canonical cWW pair
IL_6ZU9_089Tandem non-canonical cWW pairs
IL_6ZU9_090Triple sheared
IL_6ZU9_091Other IL
IL_6ZU9_092Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZU9_0041/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
homologous
J3_4V88_033
NA

Problematic loops

#loop idProblemSequence
J3_6ZU9_001No text annotation
J3_6ZU9_014No text annotation
J3_6ZU9_015No text annotation
J3_6ZU9_002No text annotation
J3_6ZU9_016No text annotation
J3_6ZU9_003No text annotation
J3_6ZU9_005No text annotation
J3_6ZU9_006No text annotation
J3_6ZU9_007No text annotation
J3_6ZU9_008No text annotation
J3_6ZU9_009No text annotation
J3_6ZU9_010No text annotation
J3_6ZU9_011No text annotation
J3_6ZU9_017No text annotation
J3_6ZU9_012No text annotation
J3_6ZU9_018No text annotation
J3_6ZU9_013No text annotation
J4_6ZU9_001tRNA junction
J4_6ZU9_002No text annotation
J4_6ZU9_003No text annotation
J5_6ZU9_001No text annotation
J5_6ZU9_002No text annotation
J5_6ZU9_003No text annotation
J5_6ZU9_004No text annotation
J5_6ZU9_006No text annotation
J5_6ZU9_005No text annotation

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