HL_6ZU9_020

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6ZU9|1|2|C|709, 6ZU9|1|2|U|711, 6ZU9|1|2|G|714, 6ZU9|1|2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU9_020 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3231

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZU9|1|2|G|703
6ZU9|1|2|C|704
6ZU9|1|2|U|705
6ZU9|1|2|A|706
6ZU9|1|2|A|707
6ZU9|1|2|C|708
6ZU9|1|2|C|709
6ZU9|1|2|U|710
6ZU9|1|2|U|711
6ZU9|1|2|G|712
6ZU9|1|2|A|713
6ZU9|1|2|G|714
6ZU9|1|2|C|726
6ZU9|1|2|U|727
6ZU9|1|2|U|728
6ZU9|1|2|G|729
6ZU9|1|2|G|730
6ZU9|1|2|C|731
6ZU9|1|2|G|732
6ZU9|1|2|A|733
6ZU9|1|2|A|734
6ZU9|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A