HL_6ZU9_038

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6ZU9|1|2|G|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU9_038 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.1822

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZU9|1|2|G|1594
6ZU9|1|2|U|1595
6ZU9|1|2|C|1596
6ZU9|1|2|A|1597
6ZU9|1|2|U|1598
6ZU9|1|2|C|1599
6ZU9|1|2|A|1600
6ZU9|1|2|G|1601
6ZU9|1|2|C|1602

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S19-A

Chain L

40S ribosomal protein S20

Chain N

40S ribosomal protein S29-A