HL_6ZU9_041

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU9_041 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.2554

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6ZU9|1|2|A|829
6ZU9|1|2|U|830
6ZU9|1|2|U|831
6ZU9|1|2|U|832
6ZU9|1|2|U|833
6ZU9|1|2|G|834
6ZU9|1|2|U|835
6ZU9|1|2|U|836
6ZU9|1|2|G|837
6ZU9|1|2|G|838
6ZU9|1|2|U|839
6ZU9|1|2|U|840
6ZU9|1|2|U|841
6ZU9|1|2|C|842
6ZU9|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S11-A