HL_6ZUO_018

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_018 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1724

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZUO|1|2|A|957
6ZUO|1|2|G|958
6ZUO|1|2|G|959
6ZUO|1|2|U|960
6ZUO|1|2|G|961
6ZUO|1|2|A|962
6ZUO|1|2|A|963
6ZUO|1|2|A|964
6ZUO|1|2|U|965
6ZUO|1|2|U|966

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain x

RNA-binding protein PNO1