HL_6ZUO_021

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

6ZUO|1|2|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_021 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3969

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6ZUO|1|2|A|1113
6ZUO|1|2|U|1114
6ZUO|1|2|U|1115
6ZUO|1|2|C|1116
6ZUO|1|2|C|1117
6ZUO|1|2|C|1118
6ZUO|1|2|A|1119
6ZUO|1|2|U|1120

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain b

40S ribosomal protein S27