HL_6ZUO_029

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

6ZUO|1|2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZUO_029 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2722

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6ZUO|1|2|C|1460
6ZUO|1|2|G|1461
6ZUO|1|2|U|1462
6ZUO|1|2|U|1463
6ZUO|1|2|C|1464
6ZUO|1|2|A|1465
6ZUO|1|2|G|1466

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17

Chain g

Receptor of activated protein C kinase 1

Chain y

RNA-binding protein NOB1