HL_6ZV6_003
3D structure
- PDB id
- 6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAAUUC
- Length
- 7 nucleotides
- Bulged bases
- 6ZV6|1|2|U|160, 6ZV6|1|2|U|161
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZV6_003 not in the Motif Atlas
- Homologous match to HL_4V88_188
- Geometric discrepancy: 0.1559
- The information below is about HL_4V88_188
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6ZV6|1|2|G|156
6ZV6|1|2|U|157
6ZV6|1|2|A|158
6ZV6|1|2|A|159
6ZV6|1|2|U|160
6ZV6|1|2|U|161
6ZV6|1|2|C|162
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
Coloring options: