HL_6ZV6_027

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

6ZV6|1|2|G|1422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZV6_027 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3801

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZV6|1|2|C|1416
6ZV6|1|2|C|1417
6ZV6|1|2|C|1418
6ZV6|1|2|C|1419
6ZV6|1|2|G|1420
6ZV6|1|2|A|1421
6ZV6|1|2|G|1422
6ZV6|1|2|C|1423
6ZV6|1|2|G|1424

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain T

40S ribosomal protein S19