HL_6ZVH_012

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_012 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2749

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6ZVH|1|2|C|539
6ZVH|1|2|U|540
6ZVH|1|2|U|541
6ZVH|1|2|U|542
6ZVH|1|2|C|543
6ZVH|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains

Chain i

Endothelial differentiation-related factor 1