HL_6ZVH_019

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1558

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ZVH|1|2|A|957
6ZVH|1|2|G|958
6ZVH|1|2|G|959
6ZVH|1|2|U|960
6ZVH|1|2|G|961
6ZVH|1|2|A|962
6ZVH|1|2|A|963
6ZVH|1|2|A|964
6ZVH|1|2|U|965
6ZVH|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain O

40S ribosomal protein S14

Chain x

Transfer RNA; tRNA