HL_6ZVH_034

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGCGCCCACGG*C

Length

14 nucleotides

Bulged bases

6ZVH|1|2|G|1771, 6ZVH|1|2|G|1764, 6ZVH|1|2|C|1765, 6ZVH|1|2|C|1766, 6ZVH|1|2|C|1767, 6ZVH|1|2|A|1768, 6ZVH|1|2|C|1769, 6ZVH|1|2|G|1770

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVH_034 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3661

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZVH|1|2|G|1759
6ZVH|1|2|G|1760
6ZVH|1|2|U|1761
6ZVH|1|2|G|1771
6ZVH|1|2|C|1772
6ZVH|1|2|G|1764
6ZVH|1|2|C|1765
6ZVH|1|2|C|1766
6ZVH|1|2|C|1767
6ZVH|1|2|A|1768
6ZVH|1|2|C|1769
6ZVH|1|2|G|1770
6ZVH|1|2|G|1771
*
6ZVH|1|2|C|1772

Current chains

Chain 2

18S rRNA

Nearby chains