HL_6ZVI_005

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCUCAUAACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_005 not in the Motif Atlas

Homologous match to HL_1H4S_002

Geometric discrepancy: 0.4948

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6ZVI|1|e|G|31
6ZVI|1|e|G|32
6ZVI|1|e|C|33
6ZVI|1|e|U|34
6ZVI|1|e|C|35
6ZVI|1|e|A|36
6ZVI|1|e|U|37
6ZVI|1|e|A|38
6ZVI|1|e|A|39
6ZVI|1|e|C|40
6ZVI|1|e|C|41

Current chains

Chain e

P/E-site tRNA

Nearby chains

Chain d

Transfer RNA; tRNA

Chain f

mRNA

Chain h

Small subunit ribosomal RNA; SSU rRNA

Chain y

40S ribosomal protein S16-A