RNA 3D Hub //

6ZVI Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZVI_0011/d/13:22No text annotation
homologous
HL_6ORD_035
NA
HL_6ZVI_0021/d/31:39tRNA anticodon loop
homologous
HL_4YCO_002
HL_06059.6
HL_6ZVI_0031/d/53:61No text annotation
homologous
HL_6GSL_222
NA
HL_6ZVI_0041/e/13:23No text annotation
homologous
HL_5UD5_001
HL_48417.5
HL_6ZVI_0051/e/31:41No text annotation
homologous
HL_1H4S_002
HL_48417.5
HL_6ZVI_0061/e/54:62T-loop with 2 stacked bulged bases
homologous
HL_6UFG_008
HL_28252.8
HL_6ZVI_0071/h/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6ZVI_0081/h/70:81No text annotation
homologous
HL_8C3A_193
NA
HL_6ZVI_0091/h/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6ZVI_0101/h/190:195No text annotation
geometric
HL_7RQB_011
NA
HL_6ZVI_0111/h/230:235No text annotation
geometric
HL_4V88_198
NA
HL_6ZVI_0121/h/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZVI_0131/h/276:279Mini UNCG
geometric
HL_5TBW_071
NA
HL_6ZVI_0141/h/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6ZVI_0151/h/368:373No text annotation
homologous
HL_4V88_194
NA
HL_6ZVI_0161/h/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6ZVI_0171/h/414:419UNCG
homologous
HL_4V88_196
NA
HL_6ZVI_0181/h/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6ZVI_0191/h/491:496Mini UNCG
geometric
HL_8C3A_198
NA
HL_6ZVI_0201/h/520:532No text annotation
geometric
HL_4V88_199
NA
HL_6ZVI_0211/h/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_6ZVI_0221/h/716:722No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_6ZVI_0231/h/764:772No text annotation
homologous
HL_4V88_203
NA
HL_6ZVI_0241/h/777:783Externally structured
geometric
HL_8C3A_022
NA
HL_6ZVI_0251/h/829:843Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_6ZVI_0261/h/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6ZVI_0271/h/937:942GNRA
homologous
HL_4V88_207
NA
HL_6ZVI_0281/h/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_6ZVI_0291/h/1055:1064GNRA related
geometric
HL_5J7L_012
HL_81538.2
HL_6ZVI_0301/h/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_6ZVI_0311/h/1121:1126No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6ZVI_0321/h/1188:1197No text annotation
homologous
HL_4V88_212
NA
HL_6ZVI_0331/h/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_6ZVI_0341/h/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_6ZVI_0351/h/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_6ZVI_0361/h/1359:1364No text annotation
homologous
HL_4V88_216
NA
HL_6ZVI_0371/h/1396:1402No text annotation
homologous
HL_8C3A_222
NA
HL_6ZVI_0381/h/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_6ZVI_0391/h/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_6ZVI_0401/h/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_6ZVI_0411/h/1686:1715No text annotation
HL_6ZVI_0421/h/1778:1783GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZVI_0011/e/28:30,
1/e/42:45		No text annotation
IL_6ZVI_0021/h/24:26,
1/h/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_6ZVI_0031/h/35:37,
1/h/471:473		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6ZVI_0041/h/37:41,
1/h/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_6ZVI_0051/h/42:48,
1/h/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_6ZVI_0061/h/50:52,
1/h/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZVI_0071/h/58:63,
1/h/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6ZVI_0081/h/64:69,
1/h/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6ZVI_0091/h/109:112,
1/h/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6ZVI_0101/h/113:116,
1/h/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZVI_0111/h/117:122,
1/h/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6ZVI_0121/h/143:149,
1/h/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6ZVI_0131/h/150:152,
1/h/162:164		Isolated cWH basepair
geometric
IL_6RA4_002
IL_10167.6
IL_6ZVI_0931/h/186:189,
1/h/196:199		Double sheared
homologous
IL_8CRE_402
IL_09705.15
IL_6ZVI_0151/h/204:206,
1/h/259:263		Major groove platform with extra cWW
geometric
IL_7RQB_022
NA
IL_6ZVI_0161/h/206:208,
1/h/257:259		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_6ZVI_0171/h/265:267,
1/h/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6ZVI_0181/h/270:273,
1/h/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6ZVI_0191/h/275:276,
1/h/279:281		Single bulged U
homologous
IL_4V88_401
NA
IL_6ZVI_0201/h/311:316,
1/h/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6ZVI_0211/h/318:323,
1/h/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6ZVI_0221/h/363:365,
1/h/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_6ZVI_0231/h/411:413,
1/h/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZVI_0241/h/439:441,
1/h/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_6ZVI_0251/h/443:447,
1/h/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6ZVI_0261/h/447:448,
1/h/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_6ZVI_0271/h/480:483,
1/h/504:508		No text annotation
IL_6ZVI_0281/h/514:516,
1/h/536:543		No text annotation
geometric
IL_8VTW_081
NA
IL_6ZVI_0291/h/517:518,
1/h/533:535		Minor groove platform
geometric
IL_4LFB_004
IL_51454.3
IL_6ZVI_0301/h/518:520,
1/h/532:533		Minor groove platform
homologous
IL_4V88_412
NA
IL_6ZVI_0311/h/550:557,
1/h/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6ZVI_0321/h/557:559,
1/h/586:587		Single bulged U
homologous
IL_4V88_414
NA
IL_6ZVI_0331/h/562:568,
1/h/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_6ZVI_0341/h/616:622,
1/h/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_6ZVI_0351/h/624:626,
1/h/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6ZVI_0361/h/627:631,
1/h/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6ZVI_0371/h/646:648,
1/h/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_6ZVI_0381/h/648:652,
1/h/683:686		No text annotation
IL_6ZVI_0391/h/652:657,
1/h/677:683		No text annotation
IL_6ZVI_0401/h/698:699,
1/h/738:740		No text annotation
IL_6ZVI_0411/h/699:701,
1/h/737:738		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_6ZVI_0891/h/703:716,
1/h/722:735		No text annotation
IL_6ZVI_0421/h/746:747,
1/h/802:805		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_6ZVI_0431/h/748:750,
1/h/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6ZVI_0441/h/751:759,
1/h/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_6ZVI_0451/h/817:822,
1/h/850:854		No text annotation
IL_6ZVI_0461/h/865:866,
1/h/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_6ZVI_0901/h/868:870,
1/h/957:960		Isolated cWH basepair
homologous
IL_8C3A_510
NA
IL_6ZVI_0481/h/871:874,
1/h/953:956		Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_6ZVI_0491/h/874:878,
1/h/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6ZVI_0941/h/884:888,
1/h/924:928		No text annotation
IL_6ZVI_0501/h/893:899,
1/h/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6ZVI_0511/h/982:990,
1/h/1014:1019		No text annotation
IL_6ZVI_0521/h/990:994,
1/h/1010:1014		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_6ZVI_0531/h/1034:1036,
1/h/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_6ZVI_0541/h/1041:1044,
1/h/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6ZVI_0551/h/1051:1053,
1/h/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_6ZVI_0561/h/1111:1118,
1/h/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6ZVI_0571/h/1146:1147,
1/h/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_6ZVI_0581/h/1149:1151,
1/h/1627:1628		Single bulged G
homologous
IL_4V88_442
NA
IL_6ZVI_0591/h/1157:1160,
1/h/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6ZVI_0601/h/1173:1175,
1/h/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6ZVI_0611/h/1178:1179,
1/h/1459:1461		Minor groove platform
homologous
IL_4V88_445
NA
IL_6ZVI_0621/h/1213:1215,
1/h/1448:1450		Isolated non-canonical cWW pair
geometric
IL_1KFO_003
NA
IL_6ZVI_0631/h/1224:1233,
1/h/1252:1259		No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_6ZVI_0641/h/1234:1236,
1/h/1249:1251		No text annotation
homologous
IL_4V88_448
NA
IL_6ZVI_0651/h/1268:1270,
1/h/1440:1441		Single bulged U
homologous
IL_4V88_449
NA
IL_6ZVI_0661/h/1272:1276,
1/h/1436:1438		Isolated cWS basepair
homologous
IL_4V88_450
NA
IL_6ZVI_0911/h/1272:1278,
1/h/1430:1438		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_6ZVI_0671/h/1276:1278,
1/h/1430:1436		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_6ZVI_0681/h/1280:1281,
1/h/1426:1428		Single bulged A
homologous
IL_4V88_452
NA
IL_6ZVI_0691/h/1290:1292,
1/h/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6ZVI_0701/h/1306:1308,
1/h/1317:1318		Minor groove platform
geometric
IL_4V88_454
NA
IL_6ZVI_0711/h/1339:1342,
1/h/1383:1385		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_6ZVI_0721/h/1345:1348,
1/h/1377:1380		Minor groove platform
homologous
IL_4V88_456
NA
IL_6ZVI_0731/h/1352:1354,
1/h/1369:1373		Isolated non-canonical cWW pair
homologous
IL_4V88_457
NA
IL_6ZVI_0741/h/1389:1391,
1/h/1407:1412		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_6ZVI_0751/h/1480:1487,
1/h/1519:1527		No text annotation
homologous
IL_4V88_459
NA
IL_6ZVI_0761/h/1488:1494,
1/h/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_6ZVI_0771/h/1495:1498,
1/h/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_6ZVI_0781/h/1540:1545,
1/h/1566:1571		No text annotation
geometric
IL_4V88_462
NA
IL_6ZVI_0791/h/1636:1638,
1/h/1764:1767		No text annotation
geometric
IL_4V88_463
NA
IL_6ZVI_0801/h/1638:1641,
1/h/1760:1764		No text annotation
homologous
IL_4V88_464
NA
IL_6ZVI_0811/h/1642:1644,
1/h/1757:1759		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_6ZVI_0821/h/1644:1647,
1/h/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_6ZVI_0831/h/1650:1652,
1/h/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6ZVI_0841/h/1653:1656,
1/h/1744:1747		Double sheared
homologous
IL_4V88_468
NA
IL_6ZVI_0851/h/1656:1658,
1/h/1743:1744		Single bulged U
geometric
IL_4V88_469
NA
IL_6ZVI_0921/h/1664:1675,
1/h/1726:1737		No text annotation
IL_6ZVI_0861/h/1675:1678,
1/h/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_6ZVI_0871/h/1678:1682,
1/h/1719:1723		Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_6ZVI_014Triple sheared
IL_6ZVI_088No text annotation
IL_6ZVI_047Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZVI_0011/h/41:42,
1/h/433:439,
1/h/464:466		No text annotation
geometric
J3_4V88_078
NA
J3_6ZVI_0131/h/41:48,
1/h/431:439,
1/h/464:466		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_6ZVI_0141/h/213:228,
1/h/237:243,
1/h/250:252		No text annotation
J3_6ZVI_0021/h/633:635,
1/h/861:865,
1/h/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6ZVI_0151/h/633:635,
1/h/861:866,
1/h/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_6ZVI_0031/h/760:763,
1/h/773:775,
1/h/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_6ZVI_0181/h/878:884,
1/h/928:936,
1/h/943:950		No text annotation
J3_6ZVI_0041/h/1037:1039,
1/h/1079:1083,
1/h/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_6ZVI_0051/h/1161:1164,
1/h/1581:1587,
1/h/1609:1616		No text annotation
homologous
J3_4V88_035
NA
J3_6ZVI_0061/h/1168:1171,
1/h/1468:1470,
1/h/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J3_6ZVI_0071/h/1180:1187,
1/h/1198:1209,
1/h/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_6ZVI_0081/h/1215:1220,
1/h/1263:1267,
1/h/1442:1448		No text annotation
homologous
J3_4V88_038
NA
J3_6ZVI_0091/h/1283:1288,
1/h/1327:1332,
1/h/1419:1424		No text annotation
homologous
J3_4V88_039
NA
J3_6ZVI_0101/h/1293:1294,
1/h/1303:1306,
1/h/1318:1322		No text annotation
homologous
J3_8P9A_081
J3_76043.3
J3_6ZVI_0111/h/1336:1338,
1/h/1386:1389,
1/h/1412:1415		No text annotation
homologous
J3_4V88_040
NA
J3_6ZVI_0171/h/1336:1338,
1/h/1386:1391,
1/h/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_6ZVI_0121/h/1470:1474,
1/h/1533:1540,
1/h/1571:1574		No text annotation
homologous
J3_4V88_041
NA
J4_6ZVI_0011/d/7:10,
1/d/25:28,
1/d/42:49,
1/d/65:66		No text annotation
homologous
J4_4RDX_001
NA
J4_6ZVI_0021/e/7:10,
1/e/26:28,
1/e/45:50,
1/e/66:67		No text annotation
J4_6ZVI_0031/h/99:107,
1/h/307:309,
1/h/357:361,
1/h/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_6ZVI_0041/h/622:624,
1/h/975:980,
1/h/1021:1032,
1/h/1103:1104		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_6ZVI_0011/h/31:35,
1/h/473:479,
1/h/509:514,
1/h/543:546,
1/h/592:595		No text annotation
homologous
J5_8C3A_018
NA
J5_6ZVI_0021/h/54:57,
1/h/90:97,
1/h/386:391,
1/h/406:411,
1/h/422:426		No text annotation
J5_6ZVI_0031/h/124:143,
1/h/172:182,
1/h/203:204,
1/h/263:265,
1/h/289:293		No text annotation
J5_6ZVI_0041/h/124:143,
1/h/172:182,
1/h/203:204,
1/h/263:267,
1/h/288:293		No text annotation
J5_6ZVI_0051/h/636:642,
1/h/692:699,
1/h/738:744,
1/h/807:817,
1/h/854:860		No text annotation

Problematic loops

#loop idProblemSequence
J3_6ZVI_016No text annotation

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