HL_6ZVI_020

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_020 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1035

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZVI|1|h|A|520
6ZVI|1|h|A|521
6ZVI|1|h|U|522
6ZVI|1|h|G|523
6ZVI|1|h|U|524
6ZVI|1|h|A|525
6ZVI|1|h|A|526
6ZVI|1|h|A|527
6ZVI|1|h|U|528
6ZVI|1|h|A|529
6ZVI|1|h|C|530
6ZVI|1|h|C|531
6ZVI|1|h|U|532

Current chains

Chain h

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S24-A

Chain m

40S ribosomal protein S4-A

Chain r

40S ribosomal protein S9-A