HL_6ZVI_029

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_029 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3849

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6ZVI|1|h|U|1055
6ZVI|1|h|U|1056
6ZVI|1|h|U|1057
6ZVI|1|h|U|1058
6ZVI|1|h|U|1059
6ZVI|1|h|U|1060
6ZVI|1|h|A|1061
6ZVI|1|h|A|1062
6ZVI|1|h|U|1063
6ZVI|1|h|G|1064

Current chains

Chain h

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S27-A

Chain j

RPS1A isoform 1