HL_6ZVJ_014

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_014 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.136

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVJ|1|2|C|618
6ZVJ|1|2|A|619
6ZVJ|1|2|G|620
6ZVJ|1|2|C|621
6ZVJ|1|2|C|622
6ZVJ|1|2|G|623

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S23