HL_6ZVJ_018

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUAUUUUGUUGGUUUUCGGA

Length

21 nucleotides

Bulged bases

6ZVJ|1|2|U|890, 6ZVJ|1|2|U|898, 6ZVJ|1|2|G|902

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVJ_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1601

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6ZVJ|1|2|U|883
6ZVJ|1|2|C|884
6ZVJ|1|2|U|885
6ZVJ|1|2|A|886
6ZVJ|1|2|U|887
6ZVJ|1|2|U|888
6ZVJ|1|2|U|889
6ZVJ|1|2|U|890
6ZVJ|1|2|G|891
6ZVJ|1|2|U|892
6ZVJ|1|2|U|893
6ZVJ|1|2|G|894
6ZVJ|1|2|G|895
6ZVJ|1|2|U|896
6ZVJ|1|2|U|897
6ZVJ|1|2|U|898
6ZVJ|1|2|U|899
6ZVJ|1|2|C|900
6ZVJ|1|2|G|901
6ZVJ|1|2|G|902
6ZVJ|1|2|A|903

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11